Joomla! 1.1.3
SMF 1.1.4
JSMF 2.0.2.1
CB 1.0.6
Notes:
1. I did not un-patch in JSMF prior to adding any of these mods or before applying the JSMF update. Probably a bad thing. I did un-patch and patch after the fact.
2. I updated JSMF by copying the file only. I don't remember the name off hand but it was in the instructions somewhere around here on JoomlaHacks.
Problem:
I upgraded JSMF from 2.0.2 to 2.0.2.1 and all seemed fine however I am now getting the following problems with SMF:
1. All of my mods that use ./Sources/Subs.php broke
2. My version of SMF now shows that it's 1.1.2
3. When I try to run the SMF update to bring it "back" to 1.1.4 I receive the following report:
 Type     Action     Description
1.    Execute Modification    ./index.php    Test successful
2.    Execute Modification    ./Sources/ManageNews.php    Test failed
3.    Execute Modification    ./Sources/PersonalMessage.php    Test failed
4.    Execute Modification    ./Sources/Subs-Auth.php    Test failed
5.    Execute Modification    ./Sources/Subs-Package.php    Test failed
6.    Execute Modification    ./Sources/Subs.php    Test failed
7.    Execute Modification    ./Sources/QueryString.php    Test failed
8.    Execute Modification    ./Themes/default/xml_topic.js    Test failed
9.    Execute Modification    ./Sources/Post.php    Test failed
10.    Execute Modification    ./Sources/Display.php    Test failed
11.    Execute Modification    ./Sources/Profile.php    Test failed
12.    Execute Modification    ./Sources/LogInOut.php    Test failed
13.    Execute Modification    ./Sources/Subs-Package.php    Test successful
I've got a thread over in the simplemachines.org forum: http://www.simplemachines.org/community/index.php?topic=198373.msg1261174#msg1261174

Hopefully someone can lead me in the right direction to correct this. I have a feeling it isn't a major problem, rather something small...
Thanks in advance